activity
20232026
most citedOmics-driven hybrid dynamic modeling of bioprocesses with uncertainty estimation

8 citations · 24 across the 8 of their papers we have counts for

collaborators

8 papers

eess.SP2026

Automated feature-region selection for soft-sensor development from spectral-like measurements

Sebastián Espinel-Ríos, Wenchao Duan

Sustainable production increasingly relies on process analytical chemistry and process analytical technology to support monitoring, control, and automation. Techniques used in thes…

eess.SY2025

Switching-time bioprocess control with pulse-width-modulated optogenetics

Sebastián Espinel-Ríos

Biotechnology can benefit from dynamic control to improve production efficiency. In this context, optogenetics enables modulation of gene expression using light as an external inpu…

eess.SY2025★ 3 cited

Reinforcement learning for robust dynamic metabolic control

Sebastián Espinel-Ríos, River Walser, Dongda Zhang

Dynamic metabolic control allows key metabolic fluxes to be modulated in real time, enhancing bioprocess flexibility and expanding available optimization degrees of freedom. This i…

eess.SY2025★ 6 cited

Reinforcement learning for efficient and robust multi-setpoint and multi-trajectory tracking in bioprocesses

Sebastián Espinel-Ríos, José L. Avalos, Ehecatl Antonio del Rio Chanona +1

Efficient and robust bioprocess control is essential for maximizing performance and adaptability in advanced biotechnological systems. In this work, we present a reinforcement-lear…

eess.SY2024★ 2 cited

Enhancing reinforcement learning for population setpoint tracking in co-cultures

Sebastián Espinel-Ríos, Joyce Qiaoxi Mo, Dongda Zhang +2

Efficient multiple setpoint tracking can enable advanced biotechnological applications, such as maintaining desired population levels in co-cultures for optimal metabolic division…

q-bio.QM2024★ 8 cited

Omics-driven hybrid dynamic modeling of bioprocesses with uncertainty estimation

Sebastián Espinel-Ríos, José Montaño López, José L. Avalos

This work presents an omics-driven modeling pipeline that integrates machine-learning tools to facilitate the dynamic modeling of multiscale biological systems. Random forests and…

eess.SY2023★ 5 cited

Linking intra- and extra-cellular metabolic domains via neural-network surrogates for dynamic metabolic control

Sebastián Espinel-Ríos, José L. Avalos

We outline a modeling and optimization strategy for investigating dynamic metabolic engineering interventions. Our framework is particularly useful at the early stages of research…

eess.SY2023

Towards a modeling, optimization and predictive control framework for fed-batch metabolic cybergenetics

Sebastián Espinel-Ríos, Bruno Morabito, Johannes Pohlodek +3

Biotechnology offers many opportunities for the sustainable manufacturing of valuable products. The toolbox to optimize bioprocesses includes \textit{extracellular} process element…