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cond-mat.soft2025★ 1 cited
Configurational entropy of randomly double-folding ring polymers
Pieter H. W. van der Hoek, Angelo Rosa, Elham Ghobadpour +1
Topologically constrained genome-like polymers often double-fold into tree-like configurations. Here we calculate the exact number of tightly double-folded configurations available…
cond-mat.soft2024★ 6 cited
Amoeba Monte Carlo algorithms for random trees with controlled branching activity: efficient trial move generation and universal dynamics
Pieter H. W. van der Hoek, Angelo Rosa, Ralf Everaers
The reptation Monte Carlo algorithm is a simple, physically motivated and efficient method for equilibrating semi-dilute solutions of linear polymers. Here we propose two simple ge…