3 papers
q-bio.MN2025
Characterisation of conserved and reacting moieties in chemical reaction networks
Hadjar Rahou, Hulda S. Haraldsdottir, Filippo Martinelli +2
A detailed understanding of biochemical networks at the molecular level is essential for studying complex cellular processes. In this paper, we provide a comprehensive description…
q-bio.QM2017
Creation and analysis of biochemical constraint-based models: the COBRA Toolbox v3.0
Laurent Heirendt, Sylvain Arreckx, Thomas Pfau +52
COnstraint-Based Reconstruction and Analysis (COBRA) provides a molecular mechanistic framework for integrative analysis of experimental data and quantitative prediction of physico…
q-bio.MN2016
Identification of conserved moieties in metabolic networks by graph theoretical analysis of atom transition networks
Hulda S. Haraldsdóttir, Ronan M. T. Fleming
Conserved moieties are groups of atoms that remain intact in all reactions of a metabolic network. Identification of conserved moieties gives insight into the structure and functio…