3 papers
nlin.CG2026
Agnosiophobia in a virtual agent: behavioral and dynamical architecture in Lenia
Jesse Cool, Benedikt Hartl, Michael Levin +1
All embodied agents are fundamentally patterns in physiological or other excitable media, blurring the distinction between objects and processes. Emergent patterns with complex beh…
q-bio.GN2025
Inferring genotype-phenotype maps using attention models
Krishna Rijal, Caroline M. Holmes, Samantha Petti +3
Predicting phenotype from genotype is a central challenge in genetics. Traditional approaches in quantitative genetics typically analyze this problem using methods based on linear…
cs.LG2025
On learning functions over biological sequence space: relating Gaussian process priors, regularization, and gauge fixing
Samantha Petti, Carlos Martí-Gómez, Justin B. Kinney +2
Mappings from biological sequences (DNA, RNA, protein) to quantitative measures of sequence functionality play an important role in contemporary biology. We are interested in the r…