most citedSnakemaker: Seamlessly transforming ad-hoc analyses into sustainable Snakemake workflows with generative AI

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cs.DB2026

A benchmark suite of intracellular Boolean model variants and multiscale simulations for computational biology

Marco Masera, Riccardo Smeriglio, Roberta Bardini +2

We present PhysiBench, an open resource for developing and evaluating computational methods in systems biology including a benchmark suite of 612 executable intracellular Boolean r…