42 citations · 47 across the 6 of their papers we have counts for
7 papers
FleXray: Universal Clinical X-ray Segmentation
Victor Ion Butoi, Vivek Gopalakrishnan, John V. Guttag +2
X-ray is medicine's most widely used imaging modality, yet remains among its least quantitative. Unlike volumetric modalities like CT or MRI, X-ray collapses 3D anatomy into a 2D p…
PolyPose: Deformable 2D/3D Registration via Polyrigid Transformations
Vivek Gopalakrishnan, Neel Dey, Polina Golland
Determining the 3D pose of a patient from a limited set of 2D X-ray images is a critical task in interventional settings. While preoperative volumetric imaging (e.g., CT and MRI) p…
Differentiable Voxel-based X-ray Rendering Improves Sparse-View 3D CBCT Reconstruction
Mohammadhossein Momeni, Vivek Gopalakrishnan, Neel Dey +2
We present DiffVox, a self-supervised framework for Cone-Beam Computed Tomography (CBCT) reconstruction by directly optimizing a voxelgrid representation using physics-based differ…
Grad-CAMO: Learning Interpretable Single-Cell Morphological Profiles from 3D Cell Painting Images
Vivek Gopalakrishnan, Jingzhe Ma, Zhiyong Xie
Despite their black-box nature, deep learning models are extensively used in image-based drug discovery to extract feature vectors from single cells in microscopy images. To better…
Intraoperative 2D/3D Image Registration via Differentiable X-ray Rendering
Vivek Gopalakrishnan, Neel Dey, Polina Golland
Surgical decisions are informed by aligning rapid portable 2D intraoperative images (e.g., X-rays) to a high-fidelity 3D preoperative reference scan (e.g., CT). 2D/3D image registr…
Fast Auto-Differentiable Digitally Reconstructed Radiographs for Solving Inverse Problems in Intraoperative Imaging
Vivek Gopalakrishnan, Polina Golland
The use of digitally reconstructed radiographs (DRRs) to solve inverse problems such as slice-to-volume registration and 3D reconstruction is well-studied in preoperative settings.…
Multiscale Comparative Connectomics
Vivek Gopalakrishnan, Jaewon Chung, Eric Bridgeford +8
The connectome, a map of the structural and/or functional connections in the brain, provides a complex representation of the neurobiological phenotypes on which it supervenes. This…