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cs.LG2026
Learning Latent Protein Languages for Autoregressive Generation
Mahdi Pourmirzaei, Farzaneh Esmaili, Amir Ziashahabi +2
Autoregressive transformers remain comparatively weak for protein sequence and structure generation. We study the role of target representation: amino acid tokens encode residue id…
cs.LG2025
Prot2Token: A Unified Framework for Protein Modeling via Next-Token Prediction
Mahdi Pourmirzaei, Farzaneh Esmaili, Salhuldin Alqarghuli +6
The diverse nature of protein prediction tasks has traditionally necessitated specialized models, hindering the development of broadly applicable and computationally efficient Prot…