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cs.LG2026
Static Recovery Is Not Dynamic Stability: Dynamics-Aware Benchmarking of Protein Motif Scaffolding
Emile de Bruyn, Moritz Schäffler, Jannik Schneider +9
Protein motif scaffolding benchmarks assess whether generative models can build scaffolds around functionally important residues. Their conclusions depend on which motifs are teste…
cs.LG2026★ 1 cited
From Words to Amino Acids: Does the Curse of Depth Persist?
Aleena Siji, Amir Mohammad Karimi Mamaghan, Ferdinand Kapl +9
Protein language models (PLMs) have become widely adopted as general-purpose models, demonstrating strong performance in protein engineering and de novo design. Like large language…