32 citations · 35 across the 3 of their papers we have counts for
3 papers
Ankh3: Multi-Task Pretraining with Sequence Denoising and Completion Enhances Protein Representations
Hazem Alsamkary, Mohamed Elshaffei, Mohamed Elkerdawy +1
Protein language models (PLMs) have emerged as powerful tools to detect complex patterns of protein sequences. However, the capability of PLMs to fully capture information on prote…
Beyond Simple Concatenation: Fairly Assessing PLM Architectures for Multi-Chain Protein-Protein Interactions Prediction
Hazem Alsamkary, Mohamed Elshaffei, Mohamed Soudy +5
Protein-protein interactions (PPIs) are fundamental to numerous cellular processes, and their characterization is vital for understanding disease mechanisms and guiding drug discov…
Ankh: Optimized Protein Language Model Unlocks General-Purpose Modelling
Ahmed Elnaggar, Hazem Essam, Wafaa Salah-Eldin +4
As opposed to scaling-up protein language models (PLMs), we seek improving performance via protein-specific optimization. Although the proportionality between the language model si…