5 citations · 5 across the 2 of their papers we have counts for
4 papers
Ctrl-DNA: Controllable Cell-Type-Specific Regulatory DNA Design via Constrained RL
Xingyu Chen, Shihao Ma, Runsheng Lin +2
Designing regulatory DNA sequences that achieve precise cell-type-specific gene expression is crucial for advancements in synthetic biology, gene therapy and precision medicine. Al…
BioReason: Incentivizing Multimodal Biological Reasoning within a DNA-LLM Model
Adibvafa Fallahpour, Andrew Magnuson, Purav Gupta +8
Unlocking deep and interpretable biological reasoning from complex genomic data remains a major AI challenge limiting scientific progress. While current DNA foundation models excel…
metasnf: Meta Clustering with Similarity Network Fusion in R
Prashanth S Velayudhan, Xiaoqiao Xu, Prajkta Kallurkar +13
metasnf is an R package that enables users to apply meta clustering, a method for efficiently searching a broad space of cluster solutions by clustering the solutions themselves, t…
Integrate Any Omics: Towards genome-wide data integration for patient stratification
Shihao Ma, Andy G. X. Zeng, Benjamin Haibe-Kains +3
High-throughput omics profiling advancements have greatly enhanced cancer patient stratification. However, incomplete data in multi-omics integration presents a significant challen…