4 citations · 6 across the 6 of their papers we have counts for
6 papers
AptaTRACE: Elucidating Sequence-Structure Binding Motifs by Uncovering Selection Trends in HT-SELEX Experiments
Phuong Dao, Jan Hoinka, Yijie Wang +7
Aptamers, short synthetic RNA/DNA molecules binding specific targets with high affinity and specificity, are utilized in an increasing spectrum of bio-medical applications. Aptamer…
Distribution of graph-distances in Boltzmann ensembles of RNA secondary structures
Rolf Backofen, Markus Fricke, Manja Marz +2
Large RNA molecules often carry multiple functional domains whose spatial arrangement is an important determinant of their function. Pre-mRNA splicing, furthermore, relies on the s…
Equivalence Classes of Optimal Structures in HP Protein Models Including Side Chains
Martin Mann, Rolf Backofen, Sebastian Will
Lattice protein models, as the Hydrophobic-Polar (HP) model, are a common abstraction to enable exhaustive studies on structure, function, or evolution of proteins. A main issue is…
Decomposition Techniques for Subgraph Matching
Stephane Zampelli, Martin Mann, Yves Deville +1
In the constraint programming framework, state-of-the-art static and dynamic decomposition techniques are hard to apply to problems with complete initial constraint graphs. For suc…
An Information Extraction Core System for Real World German Text Processing
G. Neumann, R. Backofen, J. Baur +2
This paper describes SMES, an information extraction core system for real world German text processing. The basic design criterion of the system is of providing a set of basic powe…
Controlling Functional Uncertainty
Rolf Backofen
There have been two different methods for checking the satisfiability of feature descriptions that use the functional uncertainty device, namely~\cite{Kaplan:88CO} and \cite{Backof…