7 citations · 9 across the 4 of their papers we have counts for
4 papers
BindEnergyCraft: Casting Protein Structure Predictors as Energy-Based Models for Binder Design
Divya Nori, Anisha Parsan, Caroline Uhler +1
Protein binder design has been transformed by hallucination-based methods that optimize structure prediction confidence metrics, such as the interface predicted TM-score (ipTM), vi…
RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
Divya Nori, Wengong Jin
The growing significance of RNA engineering in diverse biological applications has spurred interest in developing AI methods for structure-based RNA design. While diffusion models…
Identification of Knowledge Neurons in Protein Language Models
Divya Nori, Shivali Singireddy, Marina Ten Have
Neural language models have become powerful tools for learning complex representations of entities in natural language processing tasks. However, their interpretability remains a s…
Evaluating Zero-Shot Scoring for In Vitro Antibody Binding Prediction with Experimental Validation
Divya Nori, Simon V. Mathis, Amir Shanehsazzadeh
The success of therapeutic antibodies relies on their ability to selectively bind antigens. AI-based antibody design protocols have shown promise in generating epitope-specific des…