activity
20232025
most citedBMRetriever: Tuning Large Language Models as Better Biomedical Text Retrievers

2 citations · 5 across the 6 of their papers we have counts for

collaborators

6 papers

cs.CL2025

MedAgentGym: A Scalable Agentic Training Environment for Code-Centric Reasoning in Biomedical Data Science

Ran Xu, Yuchen Zhuang, Yishan Zhong +13

We introduce MedAgentGym, a scalable and interactive training environment designed to enhance coding-based biomedical reasoning capabilities in large language model (LLM) agents. M…

cs.CL2024

MedAdapter: Efficient Test-Time Adaptation of Large Language Models towards Medical Reasoning

Wenqi Shi, Ran Xu, Yuchen Zhuang +5

Despite their improved capabilities in generation and reasoning, adapting large language models (LLMs) to the biomedical domain remains challenging due to their immense size and co…

cs.CL2024★ 2 cited

BMRetriever: Tuning Large Language Models as Better Biomedical Text Retrievers

Ran Xu, Wenqi Shi, Yue Yu +6

Developing effective biomedical retrieval models is important for excelling at knowledge-intensive biomedical tasks but still challenging due to the deficiency of sufficient public…

cs.CL2024★ 1 cited

RAM-EHR: Retrieval Augmentation Meets Clinical Predictions on Electronic Health Records

Ran Xu, Wenqi Shi, Yue Yu +5

We present RAM-EHR, a Retrieval AugMentation pipeline to improve clinical predictions on Electronic Health Records (EHRs). RAM-EHR first collects multiple knowledge sources, conver…

cs.CL2024★ 2 cited

EHRAgent: Code Empowers Large Language Models for Few-shot Complex Tabular Reasoning on Electronic Health Records

Wenqi Shi, Ran Xu, Yuchen Zhuang +7

Large language models (LLMs) have demonstrated exceptional capabilities in planning and tool utilization as autonomous agents, but few have been developed for medical problem-solvi…

cs.LG2023

Autonomous Soft Tissue Retraction Using Demonstration-Guided Reinforcement Learning

Amritpal Singh, Wenqi Shi, May D Wang

In the context of surgery, robots can provide substantial assistance by performing small, repetitive tasks such as suturing, needle exchange, and tissue retraction, thereby enablin…