3 papers
cs.CV2026
Rethinking Genomic Modeling Through Optical Character Recognition
Hongxin Xiang, Pengsen Ma, Yunkang Cao +4
Recent genomic foundation models largely adopt large language model architectures that treat DNA as a one-dimensional token sequence. However, exhaustive sequential reading is stru…
q-bio.QM2026
Empowering Chemical Structures with Biological Insights for Scalable Phenotypic Virtual Screening
Xiaoqing Lian, Pengsen Ma, Tengfeng Ma +9
Motivation: The scalable identification of bioactive compounds is essential for contemporary drug discovery. This process faces a key trade-off: structural screening offers scalabi…
cs.CV2025
ImageDDI: Image-enhanced Molecular Motif Sequence Representation for Drug-Drug Interaction Prediction
Yuqin He, Tengfei Ma, Chaoyi Li +6
To mitigate the potential adverse health effects of simultaneous multi-drug use, including unexpected side effects and interactions, accurately identifying and predicting drug-drug…