3 papers
cs.CV2025
SAMJ: Fast Image Annotation on ImageJ/Fiji via Segment Anything Model
Carlos Garcia-Lopez-de-Haro, Caterina Fuster-Barcelo, Curtis T. Rueden +9
Mask annotation remains a significant bottleneck in AI-driven biomedical image analysis due to its labor-intensive nature. To address this challenge, we introduce SAMJ, a user-frie…
cs.HC2025
manvr3d: A Platform for Human-in-the-loop Cell Tracking in Virtual Reality
Samuel Pantze, Jean-Yves Tinevez, Matthew McGinity +1
We propose manvr3d, a novel VR-ready platform for interactive human-in-the-loop cell tracking. We utilize VR controllers and eye-tracking hardware to facilitate rapid ground truth…
eess.IV2023
JDLL: A library to run Deep Learning models on Java bioimage informatics platforms
Carlos Garcia Lopez de Haro, Stephane Dallongeville, Thomas Musset +6
We present JDLL, an agile Java library that offers a comprehensive toolset/API to unify the development of high-end applications of DL for bioimage analysis and to streamline their…