activity
20232026
most citedProtein-ligand binding representation learning from fine-grained interactions

4 citations · 11 across the 13 of their papers we have counts for

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7 papers · 1 filter

cs.LG2026

WMLLM: Self-Evolving Optimization Agents via Predict-Then-Act World Modeling

Zhongzheng Li, Qingsong Ran, Shikun Feng +5

Black-box optimization problems remain challenging because of large, weakly structured, and high-dimensional search spaces. Existing methods often suffer from poor sample efficienc…

cs.LG2025

MCCE: A Framework for Multi-LLM Collaborative Search in Discrete Spaces with Similarity-Filtered Preference Learning

Nian Ran, Zhongzheng Li, Yue Wang +5

Multi-objective discrete optimization problems, such as molecular design, pose significant challenges due to their vast and unstructured combinatorial spaces. Traditional evolution…

cs.LG2025

Straight-Line Diffusion Model for Efficient 3D Molecular Generation

Yuyan Ni, Shikun Feng, Haohan Chi +5

Diffusion-based models have shown great promise in molecular generation but often require a large number of sampling steps to generate valid samples. In this paper, we introduce a…

cs.LG2024★ 3 cited

UniGEM: A Unified Approach to Generation and Property Prediction for Molecules

Shikun Feng, Yuyan Ni, Yan Lu +3

Molecular generation and molecular property prediction are both crucial for drug discovery, but they are often developed independently. Inspired by recent studies, which demonstrat…

cs.LG2024★ 1 cited

Pre-training with Fractional Denoising to Enhance Molecular Property Prediction

Yuyan Ni, Shikun Feng, Xin Hong +5

Deep learning methods have been considered promising for accelerating molecular screening in drug discovery and material design. Due to the limited availability of labelled data, v…

cs.LG2024

Contextual Molecule Representation Learning from Chemical Reaction Knowledge

Han Tang, Shikun Feng, Bicheng Lin +4

In recent years, self-supervised learning has emerged as a powerful tool to harness abundant unlabelled data for representation learning and has been broadly adopted in diverse are…

cs.LG2023★ 3 cited

UniMAP: Universal SMILES-Graph Representation Learning

Shikun Feng, Lixin Yang, Yanwen Huang +3

Molecular representation learning is fundamental for many drug related applications. Most existing molecular pre-training models are limited in using single molecular modality, eit…