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cond-mat.soft2025
Characterizing the embedded states of a fluorescent probe within a lipid bilayer using molecular dynamics simulations
Ryo Okabe, Natsuumi Ito, Yuya Matsubara +4
The physicochemical properties of lipid bilayers (membranes) are closely associated with various cellular functions and are often evaluated using absorption and fluorescence spectr…
cond-mat.soft2024★ 5 cited
A methodology of quantifying membrane permeability based on returning probability theory and molecular dynamics simulation
Yuya Matsubara, Ryo Okabe, Ren Masayama +4
We propose a theoretical approach to estimate the permeability coefficient of substrates (permeants) for crossing membranes from donor (D) phase to acceptor (A) phase by means of m…