2 papers
q-bio.GN2025
inMOTIFin: a lightweight end-to-end simulation software for regulatory sequences
Katalin Ferenc, Lorenzo Martini, Ieva Rauluseviciute +2
The accurate development, assessment, interpretation, and benchmarking of bioinformatics frameworks for analyzing transcriptional regulatory grammars rely on controlled simulations…
cs.LG2024
CAVACHON: a hierarchical variational autoencoder to integrate multi-modal single-cell data
Ping-Han Hsieh, Ru-Xiu Hsiao, Katalin Ferenc +6
Paired single-cell sequencing technologies enable the simultaneous measurement of complementary modalities of molecular data at single-cell resolution. Along with the advances in t…