2 papers
cs.LG2026
scCBGM: Interpretable Single-Cell Counterfactual Editing
Alma Andersson, Aya Abdelsalam Ismail, Edward De Brouwer +6
Understanding cellular phenotypes and how they respond to perturbations is critical for disease biology and therapeutic design. Single-cell RNA sequencing enables characterization…
cs.LG2024
Concept Bottleneck Language Models For protein design
Aya Abdelsalam Ismail, Tuomas Oikarinen, Amy Wang +8
We introduce Concept Bottleneck Protein Language Models (CB-pLM), a generative masked language model with a layer where each neuron corresponds to an interpretable concept. Our arc…