4 citations · 10 across the 4 of their papers we have counts for
4 papers · 1 filter
IsoAlign: Isoform-Aware DNA-Protein Alignment via Joint-Embedding Predictive Architectures
Niousha Sadjadi, Arman Seyed-Ahmadi, Tony Tu +8
Genomic foundation models (GFMs) have emerged as a powerful paradigm for learning DNA sequence representations, yet existing self-supervised pretraining strategies overlook alterna…
Enhancing DNA Foundation Models to Address Masking Inefficiencies
Monireh Safari, Pablo Millan Arias, Scott C. Lowe +3
Masked language modelling (MLM) as a pretraining objective has been widely adopted in genomic sequence modelling. While pretrained models can successfully serve as encoders for var…
BIOSCAN-5M: A Multimodal Dataset for Insect Biodiversity
Zahra Gharaee, Scott C. Lowe, ZeMing Gong +10
As part of an ongoing worldwide effort to comprehend and monitor insect biodiversity, this paper presents the BIOSCAN-5M Insect dataset to the machine learning community and establ…
BarcodeBERT: Transformers for Biodiversity Analysis
Pablo Millan Arias, Niousha Sadjadi, Monireh Safari +9
In the global challenge of understanding and characterizing biodiversity, short species-specific genomic sequences known as DNA barcodes play a critical role, enabling fine-grained…