activity
20232025
most citedRawHash2: Mapping Raw Nanopore Signals Using Hash-Based Seeding and Adaptive Quantization

19 citations · 30 across the 5 of their papers we have counts for

collaborators

5 papers

cs.AR2025★ 8 cited

MARS: Processing-In-Memory Acceleration of Raw Signal Genome Analysis Inside the Storage Subsystem

Melina Soysal, Konstantina Koliogeorgi, Can Firtina +8

Raw signal genome analysis (RSGA) has emerged as a promising approach to enable real-time genome analysis by directly analyzing raw electrical signals. However, rapid advancements…

cs.AR2025

Proteus: Enabling High-Performance Processing-Using-DRAM with Dynamic Bit-Precision, Adaptive Data Representation, and Flexible Arithmetic

Geraldo F. Oliveira, Mayank Kabra, Yuxin Guo +8

Processing-using-DRAM (PUD) is a paradigm where the analog operational properties of DRAM are used to perform bulk logic operations. While PUD promises high throughput at low energ…

cs.AR2024

Simultaneous Many-Row Activation in Off-the-Shelf DRAM Chips: Experimental Characterization and Analysis

Ismail Emir Yuksel, Yahya Can Tugrul, F. Nisa Bostanci +8

We experimentally analyze the computational capability of commercial off-the-shelf (COTS) DRAM chips and the robustness of these capabilities under various timing delays between DR…

cs.AR2023★ 3 cited

PULSAR: Simultaneous Many-Row Activation for Reliable and High-Performance Computing in Off-the-Shelf DRAM Chips

Ismail Emir Yuksel, Yahya Can Tugrul, F. Nisa Bostanci +8

Data movement between the processor and the main memory is a first-order obstacle against improving performance and energy efficiency in modern systems. To address this obstacle, P…

q-bio.GN2023★ 19 cited

RawHash2: Mapping Raw Nanopore Signals Using Hash-Based Seeding and Adaptive Quantization

Can Firtina, Melina Soysal, Joël Lindegger +1

Summary: Raw nanopore signals can be analyzed while they are being generated, a process known as real-time analysis. Real-time analysis of raw signals is essential to utilize the u…