20 citations · 21 across the 3 of their papers we have counts for
4 papers
Model selection for stochastic dynamics: a parsimonious and principled approach
Andonis Gerardos
This thesis focuses on the discovery of stochastic differential equations (SDEs) and stochastic partial differential equations (SPDEs) from noisy and discrete time series. A major…
Principled model selection for stochastic dynamics
Andonis Gerardos, Pierre Ronceray
Complex dynamical systems, from macromolecules to ecosystems, are often modeled by stochastic differential equations. To learn such models from data, a common approach involves spa…
Inferring geometrical dynamics of cell nucleus translocation
Sirine Amiri, Yirui Zhang, Andonis Gerardos +2
The ability of eukaryotic cells to squeeze through constrictions is limited by the stiffness of their large and rigid nucleus. However, migrating cells are often able to overcome t…
Correlations from structure and phylogeny combine constructively in the inference of protein partners from sequences
Andonis Gerardos, Nicola Dietler, Anne-Florence Bitbol
Inferring protein-protein interactions from sequences is an important task in computational biology. Recent methods based on Direct Coupling Analysis (DCA) or Mutual Information (M…