activity
20202025
most citedPycro-manager: open-source software for integrated microscopy hardware control and image processing

131 citations · 147 across the 7 of their papers we have counts for

collaborators

7 papers

eess.IV2025★ 1 cited

Computationally Efficient Information-Driven Optical Design with Interchanging Optimization

Eric Markley, Henry Pinkard, Leyla Kabuli +2

Recent work has demonstrated that imaging systems can be evaluated through the information content of their measurements alone, enabling application-agnostic optical design that av…

physics.optics2025★ 8 cited

Designing lensless imaging systems to maximize information capture

Leyla A. Kabuli, Henry Pinkard, Eric Markley +2

Mask-based lensless imaging uses an optical encoder (e.g. a phase or amplitude mask) to capture measurements, then a computational decoding algorithm to reconstruct images. In this…

cs.AI2025★ 3 cited

ARC-AGI-2: A New Challenge for Frontier AI Reasoning Systems

Francois Chollet, Mike Knoop, Gregory Kamradt +2

The Abstraction and Reasoning Corpus for Artificial General Intelligence (ARC-AGI), introduced in 2019, established a challenging benchmark for evaluating the general fluid intelli…

physics.optics2024★ 2 cited

Information-driven design of imaging systems

Henry Pinkard, Leyla Kabuli, Eric Markley +3

Imaging systems have traditionally been designed to mimic the human eye and produce visually interpretable measurements. Modern imaging systems, however, process raw measurements c…

cs.CV2024★ 1 cited

The Berkeley Single Cell Computational Microscopy (BSCCM) Dataset

Henry Pinkard, Cherry Liu, Fanice Nyatigo +2

Computational microscopy, in which hardware and algorithms of an imaging system are jointly designed, shows promise for making imaging systems that cost less, perform more robustly…

cs.IT2022★ 1 cited

A visual introduction to information theory

Henry Pinkard, Laura Waller

Information theory, though originally developed for communications engineering, provides mathematical tools with broad applications across science. These tools characterize the fun…

q-bio.QM2020★ 131 cited

Pycro-manager: open-source software for integrated microscopy hardware control and image processing

Henry Pinkard, Nico Stuurman, Laura Waller

μManager, an open-source microscopy acquisition software, has been an essential tool for many microscopy experiments over the past 15 years, but is not easy to use for experiments…