activity
20232026
most citedEigenFold: Generative Protein Structure Prediction with Diffusion Models

39 citations · 39 across the 5 of their papers we have counts for

collaborators

5 papers

cs.LG2026

Learning over Positive and Negative Edges with Contrastive Message Passing

Peter Pao-Huang, Charilaos I. Kanatsoulis, Michael Bereket +1

Conventional approaches to learning on graphs involve message passing along existing (i.e., positive) edges to update node features. However, these approaches often disregard the p…

cs.LG2026

Generative Modeling with Flux Matching

Peter Pao-Huang, Xiaojie Qiu, Stefano Ermon

We introduce Flux Matching, a new paradigm for generative modeling that generalizes existing score-based models to a broader family of vector fields that need not be conservative.…

cs.LG2025

Geometric Generative Modeling with Noise-Conditioned Graph Networks

Peter Pao-Huang, Mitchell Black, Xiaojie Qiu

Generative modeling of graphs with spatial structure is essential across many applications from computer graphics to spatial genomics. Recent flow-based generative models have achi…

cs.CV2023

Generalized Open-World Semi-Supervised Object Detection

Garvita Allabadi, Ana Lucic, Siddarth Aananth +3

Traditional semi-supervised object detection methods assume a fixed set of object classes (in-distribution or ID classes) during training and deployment, which limits performance i…

q-bio.BM2023★ 39 cited

EigenFold: Generative Protein Structure Prediction with Diffusion Models

Bowen Jing, Ezra Erives, Peter Pao-Huang +3

Protein structure prediction has reached revolutionary levels of accuracy on single structures, yet distributional modeling paradigms are needed to capture the conformational ensem…