3 papers
cs.LG2026
Diffeomorphic Optimization
Ludwig Winkler, Andrew Leaver-Fay, Joseph Kleinhenz +1
Generative models learn data distributions that reside on a low-dimensional manifold within a higher-dimensional ambient space. Optimizing differentiable objectives on this manifol…
cs.LG2025
Do we need equivariant models for molecule generation?
Ewa M. Nowara, Joshua Rackers, Patricia Suriana +4
Deep generative models are increasingly used for molecular discovery, with most recent approaches relying on equivariant graph neural networks (GNNs) under the assumption that expl…
q-bio.BM2025
Conformation-Aware Structure Prediction of Antigen-Recognizing Immune Proteins
Frédéric A. Dreyer, Jan Ludwiczak, Karolis Martinkus +8
We introduce Ibex, a pan-immunoglobulin structure prediction model that achieves state-of-the-art accuracy in modeling the variable domains of antibodies, nanobodies, and T-cell re…