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3 papers
Measuring Scientific Capabilities of Language Models with a Systems Biology Dry Lab
Haonan Duan, Stephen Zhewen Lu, Caitlin Fiona Harrigan +5
Designing experiments and result interpretations are core scientific competencies, particularly in biology, where researchers perturb complex systems to uncover the underlying syst…
Aligning Protein Conformation Ensemble Generation with Physical Feedback
Jiarui Lu, Xiaoyin Chen, Stephen Zhewen Lu +4
Protein dynamics play a crucial role in protein biological functions and properties, and their traditional study typically relies on time-consuming molecular dynamics (MD) simulati…
Structure Language Models for Protein Conformation Generation
Jiarui Lu, Xiaoyin Chen, Stephen Zhewen Lu +4
Proteins adopt multiple structural conformations to perform their diverse biological functions, and understanding these conformations is crucial for advancing drug discovery. Tradi…