131 citations · 270 across the 6 of their papers we have counts for
6 papers
Benchmarking and Evaluation of AI Models in Biology: Outcomes and Recommendations from the CZI Virtual Cells Workshop
Elizabeth Fahsbender, Alma Andersson, Jeremy Ash +32
Artificial intelligence holds immense promise for transforming biology, yet a lack of standardized, cross domain, benchmarks undermines our ability to build robust, trustworthy mod…
WaveOrder: A differentiable wave-optical framework for scalable biological microscopy with diverse modalities
Talon Chandler, Ivan E. Ivanov, Gabriel Sturm +23
Correlative computational microscopy can accelerate imaging and modeling of cellular dynamics by relaxing trade-offs inherent to dynamic imaging. Existing computational microscopy…
DynaCLR: Contrastive Learning of Cellular Dynamics with Temporal Regularization
Eduardo Hirata-Miyasaki, Soorya Pradeep, Ziwen Liu +10
We report DynaCLR, a self-supervised method for embedding cell and organelle Dynamics via Contrastive Learning of Representations of time-lapse images. DynaCLR integrates single-ce…
Pycro-manager: open-source software for integrated microscopy hardware control and image processing
Henry Pinkard, Nico Stuurman, Laura Waller
μManager, an open-source microscopy acquisition software, has been an essential tool for many microscopy experiments over the past 15 years, but is not easy to use for experiments…
Polarized light imaging of birefringence and diattenuation at highresolution and high sensitivity
Shalin B. Mehta, Michael Shribak, Rudolf Oldenbourg
Polarized light microscopy provides unique opportunities for analyzing the molecular order in man-made and natural materials, including biological structures inside living cells, t…
Image simulation for biological microscopy: microlith
Shalin B. Mehta, Rudolf Oldenbourg
Image simulation remains under-exploited for the most widely used biological phase microscopy methods, because of difficulties in simulating partially coherent illumination. We des…