40 citations · 41 across the 12 of their papers we have counts for
7 papers · 1 filter
Modern view of activated rate processes: unidirectional fluxes at equilibrium, correlation functions, and splitting probabilities
Alexander M. Berezhkovskii, Kevin Song, Dmitrii E. Makarov
More than 80 years ago Kramers published a paper calculating how fast a Brownian particle escapes from a potential well over an activation barrier. Since then Kramers' model has be…
Thermodynamic inference from noisy single-molecule time series
Todd R. Gingrich, Oleg A. Igoshin, Anatoly B. Kolomeisky +1
Single-molecule or single-particle tracking measurements inherently yield noisy microscopic trajectories, often significantly constrained by the diffraction limit and by the finite…
Static vs dynamic rough energy landscapes: Where is diffusion faster?
Dmitrii E. Makarov, Peter Sollich
Molecules in dense environments, such as biological cells, are subjected to forces that fluctuate both in time and in space. While spatial fluctuations are captured by Lifson-Jacks…
Towards Markov-State Holography
Xizhu Zhao, Dmitrii E. Makarov, Aljaž Godec
Experiments, in particular on biological systems, typically probe lower-dimensional observables which are projections of high-dimensional dynamics. In order to infer consistent mod…
Hallmarks of Deception in Asset-Exchange Models
Kristian Blom, Dmitrii E. Makarov, Aljaž Godec
We investigate the transient and steady-state dynamics of the Bennati-Dragulescu-Yakovenko money game in the presence of probabilistic cheaters, who can misrepresent their financia…
Nonequilibrium statistical mechanics of money/energy exchange models
Maggie Miao, Kristian Blom, Dmitrii E. Makarov
Many-body dynamical models in which Boltzmann statistics can be derived directly from the underlying dynamical laws without invoking the fundamental postulates of statistical mecha…
Milestoning estimators of dissipation in systems observed at a coarse resolution: When ignorance is truly bliss
Kristian Blom, Kevin Song, Etienne Vouga +2
Many non-equilibrium, active processes are observed at a coarse-grained level, where different microscopic configurations are projected onto the same observable state. Such "lumped…