3 citations · 6 across the 6 of their papers we have counts for
6 papers
Automated Standardization of Legacy Biomedical Metadata Using an Ontology-Constrained LLM Agent
Josef Hardi, Martin J. O'Connor, Marcos Martinez-Romero +3
Descriptive scientific metadata in public repositories are often incomplete and inconsistent with community standards and ontologies, limiting data FAIRness. Large language models…
HuBMAP Data Portal: a resource for multimodal spatial and single-cell data of healthy human tissues
Morgan L. Turner, Thomas C. Smits, Tiffany S. Liaw +46
The NIH Human BioMolecular Atlas Program (HuBMAP) Data Portal (https://portal.hubmapconsortium.org/) serves as a comprehensive repository for multimodal, multi-scale spatial and si…
Knowledge engineering for open science: Building and deploying knowledge bases for metadata standards
Mark A. Musen, Martin J. O'Connor, Josef Hardi +1
Scientists strive to make their datasets available in open repositories, with the goal that they be findable, accessible, interoperable, and reusable (FAIR). Although it is hard fo…
Author Once, Publish Everywhere: Portable Metadata Authoring with the CEDAR Embeddable Editor
Martin J. O'Connor, Marcos Martinez-Romero, Attila L. Egyedi +3
High-quality, "rich" metadata are essential for making research data findable, interoperable, and reusable. The Center for Expanded Data Annotation and Retrieval (CEDAR) has long a…
Toward Total Recall: Enhancing FAIRness through AI-Driven Metadata Standardization
Sowmya S Sundaram, Rafael S. Gonçalves, Mark A Musen
Scientific metadata often suffer from incompleteness, inconsistency, and formatting errors, which hinder effective discovery and reuse of the associated datasets. We present a meth…
Use of a Structured Knowledge Base Enhances Metadata Curation by Large Language Models
Sowmya S. Sundaram, Benjamin Solomon, Avani Khatri +3
Metadata play a crucial role in ensuring the findability, accessibility, interoperability, and reusability of datasets. This paper investigates the potential of large language mode…