3 papers
cs.CV2025
Graph Lineages and Skeletal Graph Products
Eric Mjolsness, Cory B. Scott
Graphs, and sequences of growing graphs, can be used to specify the architecture of mathematical models in many fields including machine learning and computational science. Here we…
q-bio.QM2025
Synaptic spine head morphodynamics from graph grammar rules for actin dynamics
Matthew Hur, Thomas Bartol, Padmini Rangamani +2
There is a morphodynamic component to synaptic learning by which changes in dendritic (postsynaptic) spine head size are associated with the strengthening or weakening of the synap…
q-bio.QM2024★ 1 cited
Advances in the Simulation and Modeling of Complex Systems using Dynamical Graph Grammars
Eric Medwedeff, Eric Mjolsness
The Dynamical Graph Grammar (DGG) formalism can describe complex system dynamics with graphs that are mapped into a master equation. An exact stochastic simulation algorithm may be…