activity
20242026
most citedpyMBE: the Python-based Molecule Builder for ESPResSo

10 citations · 13 across the 5 of their papers we have counts for

collaborators

5 papers

cond-mat.soft2026★ 1 cited

Short Peptide Tails Modulate DNA Association and Condensation by PAMAM Dendrimers

Corinna Dannert, Pablo M. Blanco, Sebastian P. Pineda +2

Poly(amidoamine) (PAMAM) dendrimers are promising candidates for nucleic acid delivery; however, biocompatibility and transfection efficiency remain a challenge. Here, we investiga…

cond-mat.soft2026

Cooperative Conformational Transitions in Macromolecules under Mechanical Stretching. An Exactly Solved Model for Single Molecule Experiments

Javier Orradre, Pablo M. Blanco, Sergio Madurga +3

The stretching behavior of linear macromolecules undergoing conformational transitions is investigated. An exact solution is provided for a two-state system within the elastic free…

cond-mat.soft2025★ 1 cited

When and How Ultrasound Enhances Nanoparticle Diffusion in Hydrogels: A Stick-and-Release Mechanism

Pablo M. Blanco, Hedda H. Rønneberg, Rita S. Dias

Nanoparticles (NPs) are widely used as drug carriers in cancer therapy due to their ability to accumulate in tumor tissue via the enhanced permeability and retention effect. Howeve…

cond-mat.soft2024★ 10 cited

pyMBE: the Python-based Molecule Builder for ESPResSo

David Beyer, Paola B. Torres, Sebastian P. Pineda +4

We present the Python-based Molecule Builder for ESPResSo (pyMBE), an open source software to design custom Coarse-Grained (CG) models, as well as pre-defined models of polyelectro…

cond-mat.soft2024★ 1 cited

The explicit bonding Reaction ensemble Monte Carlo method

Pablo M. Blanco, Peter Košovan

We present the explicit bonding Reaction ensemble Monte Carlo (eb-RxMC) method, designed to sample reversible bonding reactions in macromolecular systems in thermodynamic equilibri…