1 citations · 1 across the 3 of their papers we have counts for
3 papers
Cross-Domain Acceleration of Open Modification Search: From Commodity Platforms to Emerging Memory and Storage Devices
Sumukh Pinge, Chang Eun Song, Po-Kai Hsu +10
Open modification search (OMS) in mass spectrometry (MS) is a data-intensive workload whose performance is dominantly limited by reference data movement rather than computation. Pr…
Towards Memory Specialization: A Case for Long-Term and Short-Term RAM
Peijing Li, Muhammad Shahir Abdurraman, Rachel Cleaveland +6
Both SRAM and DRAM have stopped scaling: there is no technical roadmap to reduce their cost (per byte/GB). As a result, memory now dominates system cost. This paper argues for a pa…
Efficient Open Modification Spectral Library Searching in High-Dimensional Space with Multi-Level-Cell Memory
Keming Fan, Wei-Chen Chen, Sumukh Pinge +2
Open Modification Search (OMS) is a promising algorithm for mass spectrometry analysis that enables the discovery of modified peptides. However, OMS encounters challenges as it exp…