5 papers
Engineering FAIR Privacy-preserving Applications that Learn Histories of Disease
Ines N. Duarte, Praphulla M. S. Bhawsar, Lee K. Mason +4
A recent report on "Learning the natural history of human disease with generative transformers" created an opportunity to assess the engineering challenge of delivering user-facing…
Fractal Language Modelling by Universal Sequence Maps (USM)
Jonas S Almeida, Daniel E Russ, Susana Vinga +6
Motivation: With the advent of Language Models using Transformers, popularized by ChatGPT, there is a renewed interest in exploring encoding procedures that numerically represent s…
A Simplified Positional Cell Type Visualization using Spatially Aggregated Clusters
Lee Mason, Jonas Almeida
We introduce a novel method for overlaying cell type proportion data onto tissue images. This approach preserves spatial context while avoiding visual clutter or excessively obscur…
Demystifying Spatial Dependence: Interactive Visualizations for Interpreting Local Spatial Autocorrelation
Lee Mason, Blanaid Hicks, Jonas Almeida
The Local Moran's I statistic is a valuable tool for identifying localized patterns of spatial autocorrelation. Understanding these patterns is crucial in spatial analysis, but int…
ClusterRadar: an Interactive Web-Tool for the Multi-Method Exploration of Spatial Clusters Over Time
Lee Mason, Blánaid Hicks, Jonas S. Almeida
Spatial cluster analysis, the detection of localized patterns of similarity in geospatial data, has a wide-range of applications for scientific discovery and practical decision mak…