activity
20232025
most citedCreating and troubleshooting microscopy analysis workflows: common challenges and common solutions

8 citations · 8 across the 2 of their papers we have counts for

collaborators

7 papers

physics.bio-ph2025

GloBIAS: strengthening the foundations of BioImage Analysis

Agustin Andres Corbat, Christa G Walther, Laura Rodríguez de la Ballina +14

There is a global need for BioImage Analysis (BIA) as advances in life sciences increasingly rely on cutting-edge imaging systems that have dramatically expanded the complexity and…

q-bio.QM2025

Evaluating Integrative Strategies for Incorporating Phenotypic Features in Spatial Transcriptomics

Levin M Moser, Ahmad Kamal Hamid, Esteban Miglietta +2

Spatial transcriptomics (ST) technologies not only offer an unprecedented opportunity to interrogate intact biological samples in a spatially informed manner, but also set the stag…

cs.CV2025

Foreground-aware Virtual Staining for Accurate 3D Cell Morphological Profiling

Alexandr A. Kalinin, Paula Llanos, Theresa Maria Sommer +11

Microscopy enables direct observation of cellular morphology in 3D, with transmitted-light methods offering low-cost, minimally invasive imaging and fluorescence microscopy providi…

q-bio.OT20248 cited

Creating and troubleshooting microscopy analysis workflows: common challenges and common solutions

Beth A Cimini

As microscopy diversifies and becomes ever-more complex, the problem of quantification of microscopy images has emerged as a major roadblock for many researchers. All researchers m…

q-bio.QM2024

Cell Painting Gallery: an open resource for image-based profiling

Erin Weisbart, Ankur Kumar, John Arevalo +3

Image-based or morphological profiling is a rapidly expanding field wherein cells are "profiled" by extracting hundreds to thousands of unbiased, quantitative features from images…

q-bio.QM2023

Defining the boundaries: challenges and advances in identifying cells in microscopy images

Nodar Gogoberidze, Beth A. Cimini

Segmentation, or the outlining of objects within images, is a critical step in the measurement and analysis of cells within microscopy images. While improvements continue to be mad…