4 papers
Critical lack of equilibrium in stochastic kinetic proofreading
E. Franco, J. J. L. Velázquez
In this paper we study the relation between the property of detailed balance and the ability of discriminating between different ligands for a class of stochastic models of kinetic…
A stochastic version of the Hopfield-Ninio kinetic proofreading model
Eugenia Franco, Juan J. L. Velázquez
In this paper we study a simple stochastic version of the Hopfield-Ninio kinetic proofreading model. The model is characterized by means of two parameters, the unbinding time, whic…
Characterizing the detailed balance property by means of measurements in chemical networks
Eugenia Franco, Bernhard Kepka, Juan J. L. Velázquez
In this paper we study how to determine if a linear biochemical network satisfies the detailed balance condition, without knowing the details of all the reactions taking place in t…
Description of Chemical Systems by means of Response Functions
E. Franco, B. Kepka, J. J. L. Velázquez
In this paper we introduce a formalism that allows to describe the response of a part of a biochemical system in terms of renewal equations. In particular, we examine under which c…