2 citations · 2 across the 11 of their papers we have counts for
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Disentangling Marginal Capacity from Geometry in Optimal-Transport Label Transfer
Ali Khodabandeh Yalabadi, Azim Dehghani Amirabad, Artem Moskalev +4
Optimal transport (OT) is widely used to align distributions and transfer labels between unpaired source and target data, but source-target composition shifts can cause rare classe…
VCLMU: Mechanism-Centric Virtual Cell World Modeling for Perturbation Response
Yuwei Miao, Azim Dehghani Amirabad, Scott Oloff +3
Predicting cellular responses to genetic perturbations is a central capability for virtual cells and a key step toward computational modeling of biological interventions. Most exis…
Predictor-Guided Latent Space Codon Optimization for Maximizing Protein Expression
Alberto Caron, Tianyu Cui, Dmytro S. Lituiev +13
Codon optimization, the process of selecting synonymous codons to improve mRNA translation efficiency and protein expression, is central to therapeutic protein production and mRNA…
PaSTel: Anchoring Histology in Spatial Transcriptomics via Multi-Scale Hierarchical Bio-Prior Contrastive Pretraining
Azim Dehghani Amirabad, Junchao Zhu, Pushpak Pati +3
Spatial transcriptomics (ST) links tissue morphology with molecular programs, motivating multimodal pretraining methods that align histology images with gene expression. However, e…