activity
20242026
most citedA survey of recent methods for addressing AI fairness and bias in biomedicine

98 citations · 107 across the 10 of their papers we have counts for

collaborators

11 papers

cs.CL2026

MedHopQA: A Disease-Centered Multi-Hop Reasoning Benchmark and Evaluation Framework for LLM-Based Biomedical Question Answering

Rezarta Islamaj, Robert Leaman, Joey Chan +13

Evaluating large language models (LLMs) in the biomedical domain requires benchmarks that can distinguish reasoning from pattern matching and remain discriminative as model capabil…

cs.CV2026

CT-Bench: A Benchmark for Multimodal Lesion Understanding in Computed Tomography

Qingqing Zhu, Qiao Jin, Tejas S. Mathai +10

Artificial intelligence (AI) can automatically delineate lesions on computed tomography (CT) and generate radiology report content, yet progress is limited by the scarcity of publi…

q-bio.GN2025

Gene-R1: Reasoning with Data-Augmented Lightweight LLMs for Gene Set Analysis

Zhizheng Wang, Yifan Yang, Qiao Jin +1

The gene set analysis (GSA) is a foundational approach for uncovering the molecular functions associated with a group of genes. Recently, LLM-powered methods have emerged to annota…

cs.CL2025★ 1 cited

Memorization in Large Language Models in Medicine: Prevalence, Characteristics, and Implications

Anran Li, Lingfei Qian, Mengmeng Du +18

Large Language Models (LLMs) have demonstrated significant potential in medicine, with many studies adapting them through continued pre-training or fine-tuning on medical data to e…

q-bio.GN2025

Knowledge-guided Contextual Gene Set Analysis Using Large Language Models

Zhizheng Wang, Chi-Ping Day, Chih-Hsuan Wei +9

Gene set analysis (GSA) is a foundational approach for interpreting genomic data of diseases by linking genes to biological processes. However, conventional GSA methods overlook cl…

cs.CL2025★ 1 cited

Supervising the search process produces reliable and generalizable information-seeking agents

Guangzhi Xiong, Qiao Jin, Xiao Wang +9

Large language models (LLMs) are transforming web search by shifting from document ranking to synthesizing answers, and are increasingly deployed as autonomous agentic search syste…

cs.AI2024

Beyond Multiple-Choice Accuracy: Real-World Challenges of Implementing Large Language Models in Healthcare

Yifan Yang, Qiao Jin, Qingqing Zhu +5

Large Language Models (LLMs) have gained significant attention in the medical domain for their human-level capabilities, leading to increased efforts to explore their potential in…

cs.AI2024★ 2 cited

Entry-level guide to the use of large language models for medical research

Qiao Jin, Nicholas Wan, Robert Leaman +20

Frontier large language models (LLMs), such as GPT-5, Claude 4.5, Gemini 3, Llama 4, and DeepSeek-R1, represent a transformative class of AI tools capable of revolutionizing variou…

cs.AI2024★ 5 cited

Adversarial Attacks on Large Language Models in Medicine

Yifan Yang, Qiao Jin, Furong Huang +1

The integration of Large Language Models (LLMs) into healthcare applications offers promising advancements in medical diagnostics, treatment recommendations, and patient care. Howe…

cs.CL2024

AgentMD: Empowering Language Agents for Risk Prediction with Large-Scale Clinical Tool Learning

Qiao Jin, Zhizheng Wang, Yifan Yang +8

Clinical calculators play a vital role in healthcare by offering accurate evidence-based predictions for various purposes such as prognosis. Nevertheless, their widespread utilizat…

cs.AI2024★ 98 cited

A survey of recent methods for addressing AI fairness and bias in biomedicine

Yifan Yang, Mingquan Lin, Han Zhao +3

Artificial intelligence (AI) systems have the potential to revolutionize clinical practices, including improving diagnostic accuracy and surgical decision-making, while also reduci…