activity
20212025
most citedRelphormer: Relational Graph Transformer for Knowledge Graph Representations

57 citations · 222 across the 15 of their papers we have counts for

collaborators

15 papers

cs.LG2025

FastMTP: Accelerating LLM Inference with Enhanced Multi-Token Prediction

Yuxuan Cai, Xiaozhuan Liang, Xinghua Wang +7

As large language models (LLMs) become increasingly powerful, the sequential nature of autoregressive generation creates a fundamental throughput bottleneck that limits the practic…

cs.CL2025

ChineseHarm-Bench: A Chinese Harmful Content Detection Benchmark

Kangwei Liu, Siyuan Cheng, Bozhong Tian +7

Large language models (LLMs) have been increasingly applied to automated harmful content detection tasks, assisting moderators in identifying policy violations and improving the ov…

q-bio.QM2024★ 1 cited

SFM-Protein: Integrative Co-evolutionary Pre-training for Advanced Protein Sequence Representation

Liang He, Peiran Jin, Yaosen Min +7

Proteins, essential to biological systems, perform functions intricately linked to their three-dimensional structures. Understanding the relationship between protein structures and…

cs.CL2024

To Forget or Not? Towards Practical Knowledge Unlearning for Large Language Models

Bozhong Tian, Xiaozhuan Liang, Siyuan Cheng +6

Large Language Models (LLMs) trained on extensive corpora inevitably retain sensitive data, such as personal privacy information and copyrighted material. Recent advancements in kn…

q-bio.QM2024★ 5 cited

BioT5+: Towards Generalized Biological Understanding with IUPAC Integration and Multi-task Tuning

Qizhi Pei, Lijun Wu, Kaiyuan Gao +6

Recent research trends in computational biology have increasingly focused on integrating text and bio-entity modeling, especially in the context of molecules and proteins. However,…

cs.CL2024

InstructEdit: Instruction-based Knowledge Editing for Large Language Models

Ningyu Zhang, Bozhong Tian, Siyuan Cheng +6

Knowledge editing for large language models can offer an efficient solution to alter a model's behavior without negatively impacting the overall performance. However, the current a…

q-bio.QM2023★ 40 cited

Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models

Yin Fang, Xiaozhuan Liang, Ningyu Zhang +5

Large Language Models (LLMs), with their remarkable task-handling capabilities and innovative outputs, have catalyzed significant advancements across a spectrum of fields. However,…

cs.CL2022★ 10 cited

Multimodal Analogical Reasoning over Knowledge Graphs

Ningyu Zhang, Lei Li, Xiang Chen +3

Analogical reasoning is fundamental to human cognition and holds an important place in various fields. However, previous studies mainly focus on single-modal analogical reasoning a…

q-bio.QM2022★ 2 cited

Multi-modal Protein Knowledge Graph Construction and Applications

Siyuan Cheng, Xiaozhuan Liang, Zhen Bi +2

Existing data-centric methods for protein science generally cannot sufficiently capture and leverage biology knowledge, which may be crucial for many protein tasks. To facilitate r…

cs.CL2022★ 26 cited

Decoupling Knowledge from Memorization: Retrieval-augmented Prompt Learning

Xiang Chen, Lei Li, Ningyu Zhang +6

Prompt learning approaches have made waves in natural language processing by inducing better few-shot performance while they still follow a parametric-based learning paradigm; the…

cs.CL2022★ 57 cited

Relphormer: Relational Graph Transformer for Knowledge Graph Representations

Zhen Bi, Siyuan Cheng, Jing Chen +3

Transformers have achieved remarkable performance in widespread fields, including natural language processing, computer vision and graph mining. However, vanilla Transformer archit…

cs.CL2022★ 2 cited

Contrastive Demonstration Tuning for Pre-trained Language Models

Xiaozhuan Liang, Ningyu Zhang, Siyuan Cheng +3

Pretrained language models can be effectively stimulated by textual prompts or demonstrations, especially in low-data scenarios. Recent works have focused on automatically searchin…

q-bio.BM2022★ 50 cited

OntoProtein: Protein Pretraining With Gene Ontology Embedding

Ningyu Zhang, Zhen Bi, Xiaozhuan Liang +6

Self-supervised protein language models have proved their effectiveness in learning the proteins representations. With the increasing computational power, current protein language…

cs.CL2022★ 5 cited

DeepKE: A Deep Learning Based Knowledge Extraction Toolkit for Knowledge Base Population

Ningyu Zhang, Xin Xu, Liankuan Tao +19

We present an open-source and extensible knowledge extraction toolkit DeepKE, supporting complicated low-resource, document-level and multimodal scenarios in the knowledge base pop…

cs.CL2021★ 24 cited

CBLUE: A Chinese Biomedical Language Understanding Evaluation Benchmark

Ningyu Zhang, Mosha Chen, Zhen Bi +20

Artificial Intelligence (AI), along with the recent progress in biomedical language understanding, is gradually changing medical practice. With the development of biomedical langua…