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q-bio.BM2026
SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins
Bowen Jing, Mihir Bafna, Anisha Parsan +5
Multistate mechanisms underlie many of the complex functions observed in natural proteins. The ability to rationally design multistate proteins would have transformative implicatio…
q-bio.BM2025★ 1 cited
AI-based Methods for Simulating, Sampling, and Predicting Protein Ensembles
Bowen Jing, Bonnie Berger, Tommi Jaakkola
Advances in deep learning have opened an era of abundant and accurate predicted protein structures; however, similar progress in protein ensembles has remained elusive. This review…
q-bio.BM2025
Learning residue level protein dynamics with multiscale Gaussians
Mihir Bafna, Bowen Jing, Bonnie Berger
Many methods have been developed to predict static protein structures, however understanding the dynamics of protein structure is essential for elucidating biological function. Whi…