3 papers
cs.CE2025
A Hierarchical Adaptive Diffusion Model for Flexible Protein-Protein Docking
Rujie Yin, Yang Shen
Structural prediction of protein-protein interactions is important to understand the molecular basis of cellular interactions, but it still faces major challenges when significant…
cs.CY2025
Tinkering Against Scaling
Bolun Zhang, Yang Shen, Linzhuo Li +4
The ascent of scaling in artificial intelligence research has revolutionized the field over the past decade, yet it presents significant challenges for academic researchers, partic…
cs.LG2024
Equivariant Blurring Diffusion for Hierarchical Molecular Conformer Generation
Jiwoong Park, Yang Shen
How can diffusion models process 3D geometries in a coarse-to-fine manner, akin to our multiscale view of the world? In this paper, we address the question by focusing on a fundame…