activity
20242026
most citedUncertainty-Aware Adaptation of Large Language Models for Protein-Protein Interaction Analysis

1 citations · 1 across the 14 of their papers we have counts for

collaborators

14 papers

cs.LG2026

When Do Multi-Agent Systems Help? An Information Bottleneck Perspective

Wendi Yu, Lianhao Zhou, Xiangjue Dong +6

LLM powered multi-agent systems (MAS) have emerged as a promising paradigm for complex tasks. However, their advantages over single-agent systems (SAS) remain unclear, with perform…

cs.LG2026

Perron--Frobenius Operator Matching for Generative Modeling

Shiqi Zhang, Wuwei Wu, Jaemin Oh +2

We introduce Perron--Frobenius Operator Matching (PFOM), a generative framework that matches density evolution via the integral PF operator, subsuming flow, diffusion, and jump mod…

cs.LG2026

Goal-driven Bayesian Optimal Experimental Design for Robust Decision-Making Under Model Uncertainty

Jinwoo Go, Xiaoning Qian, Byung-Jun Yoon

Bayesian optimal experimental design (BOED) selects experiments to maximize information gain about model parameters. However, in decision-critical settings, reducing parameter unce…

cs.LG2025

Data-Augmented Few-Shot Neural Emulator for Computer-Model System Identification

Sanket Jantre, Deepak Akhare, Zhiyuan Wang +2

Partial differential equations (PDEs) underpin the modeling of many natural and engineered systems. It can be convenient to express such models as neural PDEs rather than using tra…

cs.LG2025

Cost-effective Reduced-Order Modeling via Bayesian Active Learning

Amir Hossein Rahmati, Nathan M. Urban, Byung-Jun Yoon +1

Machine Learning surrogates have been developed to accelerate solving systems dynamics of complex processes in different science and engineering applications. To faithfully capture…

cs.LG2025

C-LoRA: Contextual Low-Rank Adaptation for Uncertainty Estimation in Large Language Models

Amir Hossein Rahmati, Sanket Jantre, Weifeng Zhang +4

Low-Rank Adaptation (LoRA) offers a cost-effective solution for fine-tuning large language models (LLMs), but it often produces overconfident predictions in data-scarce few-shot se…

cs.LG2025★ 1 cited

Uncertainty-Aware Adaptation of Large Language Models for Protein-Protein Interaction Analysis

Sanket Jantre, Tianle Wang, Gilchan Park +5

Identification of protein-protein interactions (PPIs) helps derive cellular mechanistic understanding, particularly in the context of complex conditions such as neurodegenerative d…

cs.LG2024

Hyperparameter Tuning Through Pessimistic Bilevel Optimization

Meltem Apaydin Ustun, Liang Xu, Bo Zeng +1

Automated hyperparameter search in machine learning, especially for deep learning models, is typically formulated as a bilevel optimization problem, with hyperparameter values dete…

cs.LG2024

Path-Guided Particle-based Sampling

Mingzhou Fan, Ruida Zhou, Chao Tian +1

Particle-based Bayesian inference methods by sampling from a partition-free target (posterior) distribution, e.g., Stein variational gradient descent (SVGD), have attracted signifi…

q-bio.GN2024

LoRA-BERT: a Natural Language Processing Model for Robust and Accurate Prediction of long non-coding RNAs

Nicholas Jeon, Xiaoning Qian, Lamin SaidyKhan +2

Long non-coding RNAs (lncRNAs) serve as crucial regulators in numerous biological processes. Although they share sequence similarities with messenger RNAs (mRNAs), lncRNAs perform…

cs.LG2024

Understanding Uncertainty-based Active Learning Under Model Mismatch

Amir Hossein Rahmati, Mingzhou Fan, Ruida Zhou +3

Instead of randomly acquiring training data points, Uncertainty-based Active Learning (UAL) operates by querying the label(s) of pivotal samples from an unlabeled pool selected bas…

cs.LG2024

GFlowNet Training by Policy Gradients

Puhua Niu, Shili Wu, Mingzhou Fan +1

Generative Flow Networks (GFlowNets) have been shown effective to generate combinatorial objects with desired properties. We here propose a new GFlowNet training framework, with po…

cs.CV2024

Hierarchical Neural Operator Transformer with Learnable Frequency-aware Loss Prior for Arbitrary-scale Super-resolution

Xihaier Luo, Xiaoning Qian, Byung-Jun Yoon

In this work, we present an arbitrary-scale super-resolution (SR) method to enhance the resolution of scientific data, which often involves complex challenges such as continuity, m…

cs.LG2024

Multi-modal Representation Learning for Cross-modal Prediction of Continuous Weather Patterns from Discrete Low-Dimensional Data

Alif Bin Abdul Qayyum, Xihaier Luo, Nathan M. Urban +2

World is looking for clean and renewable energy sources that do not pollute the environment, in an attempt to reduce greenhouse gas emissions that contribute to global warming. Win…