3 papers
cs.LG2025
SpecMER: Fast Protein Generation with K-mer Guided Speculative Decoding
Thomas Walton, Darin Tsui, Aryan Musharaf +1
Autoregressive models have transformed protein engineering by enabling the generation of novel protein sequences beyond those found in nature. However, their sequential inference i…
cs.LG2025
Sparse Autoencoders for Low- Protein Function Prediction and Design
Darin Tsui, Kunal Talreja, Amirali Aghazadeh
Predicting protein function from amino acid sequence remains a central challenge in data-scarce (low-) regimes, limiting machine learning-guided protein design when only small a…
cs.CC2025
Efficient Algorithm for Sparse Fourier Transform of Generalized -ary Functions
Darin Tsui, Kunal Talreja, Amirali Aghazadeh
Computing the Fourier transform of a -ary function , which maps -ary sequences to real numbers, is an important problem in mathemati…