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cs.LG2026
Learning Task-Specific Antibody Representations via Function-Aware Masking
Ayan Goel, Thomas A. Walton, Amirali Aghazadeh
Antibody-specific language models pretrained via masked language modeling (MLM) learn representations that are critical for downstream sequence design and property prediction tasks…
cs.LG2025
SpecMER: Fast Protein Generation with K-mer Guided Speculative Decoding
Thomas Walton, Darin Tsui, Aryan Musharaf +1
Autoregressive models have transformed protein engineering by enabling the generation of novel protein sequences beyond those found in nature. However, their sequential inference i…