1 citations · 1 across the 6 of their papers we have counts for
9 papers
InstructPro2: Natural Language and Biological Grounding Guided De Novo Protein Design
Charles Novak, Zhenqiao Song, Chuan Li +2
The ability to generate proteins with desired functions is a central goal of computational biology. Although natural language can express diverse design objectives, existing protei…
Joint Discrete and SE(3) Diffusion for Protein Interface Design
Zhenqiao Song, Jianwen Xie, Lei Li
The design of high-affinity, target-specific protein binders is central to the development of modern therapeutics. However, existing protein-generation methods remain limited in th…
TurboPairFormer: Fast and Stable Protein Folding Model Training with an Optimized Triangle Attention Kernel
Yide Ran, Chelsea Lowman, Jan Domański +6
Triangular attention is a core computation in AlphaFold3-style biomolecular models, with cubic cost in token count. Its shared pair bias adds a gradient reduction across attention…
Randomized Antipodal Search Done Right for Data Pareto Improvement of LLM Unlearning
Ziwen Liu, Huawei Lin, Yide Ran +5
Large language models (LLMs) sometimes memorize undesirable knowledge, which must be removed after deployment. Prior work on machine unlearning has focused largely on optimization…
ReviewGrounder: Improving Review Substantiveness with Rubric-Guided, Tool-Integrated Agents
Zhuofeng Li, Yi Lu, Dongfu Jiang +7
The rapid rise in AI conference submissions has driven increasing exploration of large language models (LLMs) for peer review support. However, LLM-based reviewers often generate s…
Sketching the Readout of Large Language Models for Scalable Data Attribution and Valuation
Yide Ran, Jianwen Xie, Minghui Wang +4
Data attribution and valuation are critical for understanding data-model synergy for Large Language Models (LLMs), yet existing gradient-based methods suffer from scalability chall…
PixARMesh: Autoregressive Mesh-Native Single-View Scene Reconstruction
Xiang Zhang, Sohyun Yoo, Hongrui Wu +3
We introduce PixARMesh, a method to autoregressively reconstruct complete 3D indoor scene meshes directly from a single RGB image. Unlike prior methods that rely on implicit signed…
To Compress or Not? Pushing the Frontier of Lossless GenAI Model Weights Compression with Exponent Concentration
Zeyu Yang, Tianyi Zhang, Jianwen Xie +3
The scaling of Generative AI (GenAI) models into the hundreds of billions of parameters makes low-precision computation indispensable for efficient deployment. We argue that the fu…
InstructPro: Natural Language Guided Ligand-Binding Protein Design
Zhenqiao Song, Ramith Hettiarachchi, Chuan Li +2
The de novo design of ligand-binding proteins with tailored functions is essential for advancing biotechnology and molecular medicine, yet existing AI approaches are limited by sca…