5 papers
IFC-SSL-Bench: Benchmarking Self-Supervised Learning for Annotation-Efficient Multispectral Imaging Flow Cytometry
Angelo Jovin Yamachui Sitcheu, Roxana-Teodora Fetescu, Thomas Lautenschlager +6
Imaging Flow Cytometry (IFC) generates large multispectral datasets, yet the need for expert annotations bottlenecks the development of supervised deep learning models. While Self-…
napari-TurboBox: Interactive Multi-Viewer Bounding Box Annotation for AI-Guided Volumetric Bioimaging
Nils Friederich, Philip Kohle, Maximilian Beichter +11
Promptable segmentation models turn one 3D bounding box into an instance mask. Box placement therefore limits how fast microscopy volumes with thousands of objects are annotated. E…
Self-Supervised Learning Strategies for a Platform to Test the Toxicity of New Chemicals and Materials
Thomas Lautenschlager, Nils Friederich, Angelo Jovin Yamachui Sitcheu +4
High-throughput toxicity testing offers a fast and cost-effective way to test large amounts of compounds. A key component for such systems is the automated evaluation via machine l…
EAP4EMSIG -- Enhancing Event-Driven Microscopy for Microfluidic Single-Cell Analysis
Nils Friederich, Angelo Jovin Yamachui Sitcheu, Annika Nassal +12
Microfluidic Live-Cell Imaging (MLCI) yields data on microbial cell factories. However, continuous acquisition is challenging as high-throughput experiments often lack real-time in…
EAP4EMSIG -- Experiment Automation Pipeline for Event-Driven Microscopy to Smart Microfluidic Single-Cells Analysis
Nils Friederich, Angelo Jovin Yamachui Sitcheu, Annika Nassal +12
Microfluidic Live-Cell Imaging (MLCI) generates high-quality data that allows biotechnologists to study cellular growth dynamics in detail. However, obtaining these continuous data…