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q-bio.PE2025★ 1 cited
phylo2vec: a library for vector-based phylogenetic tree manipulation
Neil Scheidwasser, Ayush Nag, Matthew J Penn +6
Phylogenetics is a fundamental component of evolutionary analysis frameworks in biology and linguistics. Recently, the advent of large-scale genomics and the SARS-CoV-2 pandemic ha…
q-bio.PE2024
Modelling the Stochastic Importation Dynamics and Establishment of Novel Pathogenic Strains using a General Branching Processes Framework
Jacob Curran-Sebastian, Frederik Mølkjær Andersen, Samir Bhatt
The importation and subsequent establishment of novel pathogenic strains in a population is subject to a large degree of uncertainty due to the stochastic nature of the disease dyn…