3 papers
cs.LG2025
Cell2Text: Multimodal LLM for Generating Single-Cell Descriptions from RNA-Seq Data
Oussama Kharouiche, Aris Markogiannakis, Xiao Fei +2
Single-cell RNA sequencing has transformed biology by enabling the measurement of gene expression at cellular resolution, providing information for cell types, states, and disease…
cs.CE2025
Prot2Text-V2: Protein Function Prediction with Multimodal Contrastive Alignment
Xiao Fei, Michail Chatzianastasis, Sarah Almeida Carneiro +3
Predicting protein function from sequence is a central challenge in computational biology. While existing methods rely heavily on structured ontologies or similarity-based techniqu…
cs.CL2024
Graph Linearization Methods for Reasoning on Graphs with Large Language Models
Christos Xypolopoulos, Guokan Shang, Xiao Fei +6
Large language models have evolved to process multiple modalities beyond text, such as images and audio, which motivates us to explore how to effectively leverage them for graph re…