most citedEstimating Fold Changes from Partially Observed Outcomes with Applications in Microbial Metagenomics

9 citations · 11 across the 5 of their papers we have counts for

collaborators

5 papers

stat.ME2025

Consensus Tree Estimation with False Discovery Control via Partially Ordered Sets

Maria Alejandra Valdez Cabrera, Amy D Willis, Armeen Taeb

Trees are data objects that hierarchically organize categories. Collections of trees arise in a diverse variety of fields, including evolutionary biology, machine learning, social…

stat.ME2025

Nonparametric Identification and Estimation of Ratios of Multi-Category Means under Preferential Sampling

Grant Hopkins, Sarah Teichman, Ellen Graham +1

Multi-category data arise in diverse fields including marketing, chemistry, public policy, genomics, political science, and ecology. We consider the problem of estimating ratios of…

q-bio.PE2025

Geometry of the space of phylogenetic trees with non-identical leaves

Maria Alejandra Valdez Cabrera, Amy D Willis

Phylogenetic trees summarize evolutionary relationships. The Billera-Holmes-Vogtmann (BHV) space for comparing phylogenetic trees has many elegant mathematical properties, but it d…

q-bio.QM2024★ 2 cited

Distances between Extension Spaces of Phylogenetic Trees

Maria Alejandra Valdez Cabrera, Amy D Willis

Phylogenetic trees summarize evolutionary relationships between organisms, and tools to analyze collections of phylogenetic trees enable contrasts between different genes' ancestry…

stat.ME2024★ 9 cited

Estimating Fold Changes from Partially Observed Outcomes with Applications in Microbial Metagenomics

David S Clausen, Sarah Teichman, Amy D Willis

We consider the problem of estimating fold-changes in the expected value of a multivariate outcome observed with unknown sample-specific and category-specific perturbations. This c…