2 citations · 2 across the 8 of their papers we have counts for
5 papers · 1 filter
Maximizing All-Paths Phylogenetic Diversity: Parameterized Approaches for Networks
Mark Jones, Jannik Schestag
Phylogenetic Diversity (PD) is a fundamental measure of biodiversity, originally defined on phylogenetic trees and widely used in conservation biology. Phylogenetic trees are often…
Tree Containment Parameterized by Scanwidth
Leo van Iersel, Mark Jones, Mathias Weller
TREE CONTAINMENT is a central decision problem in mathematical phylogenetics, asking whether a given rooted phylogenetic tree is embeddable in ("displayed by") a given rooted phylo…
Average-Tree Phylogenetic Diversity Parameterized by Scanwidth and Invisibility
Leo van Iersel, Mark Jones, Jannik Schestag +2
We investigate parameterized algorithms for computing the average-tree phylogenetic diversity (APD) in rooted phylogenetic networks, studying the problem under different structural…
Parameterized Algorithms for Diversity of Networks with Ecological Dependencies
Mark Jones, Jannik Schestag
For a phylogenetic tree, the phylogenetic diversity of a set A of taxa is the total weight of edges on paths to A. Finding small sets of maximal diversity is crucial for conservati…
Consistency of orthology and paralogy constraints in the presence of gene transfers
Mark Jones, Manuel Lafond, Celine Scornavacca
Orthology and paralogy relations are often inferred by methods based on gene similarity, which usually yield a graph depicting the relationships between gene pairs. Such relation g…