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q-bio.BM2025★ 1 cited
PFMBench: Protein Foundation Model Benchmark
Zhangyang Gao, Hao Wang, Cheng Tan +6
This study investigates the current landscape and future directions of protein foundation model research. While recent advancements have transformed protein science and engineering…
q-bio.BM2025
ProtInvTree: Deliberate Protein Inverse Folding with Reward-guided Tree Search
Mengdi Liu, Xiaoxue Cheng, Zhangyang Gao +4
Designing protein sequences that fold into a target 3D structure, known as protein inverse folding, is a fundamental challenge in protein engineering. While recent deep learning me…